Assembling a geospatial database of tsetse-transmitted animal trypanosomosis for Africa
Identifieur interne : 000231 ( Main/Exploration ); précédent : 000230; suivant : 000232Assembling a geospatial database of tsetse-transmitted animal trypanosomosis for Africa
Auteurs : Giuliano Cecchi [Éthiopie] ; Massimo Paone [Italie] ; Udo Feldmann [Autriche] ; Marc Jb Vreysen [Autriche] ; Oumar Diall [Éthiopie] ; Raffaele C. Mattioli [Italie]Source :
- Parasites & Vectors [ 1756-3305 ] ; 2014.
Abstract
African animal trypanosomosis (AAT), or nagana, is widespread within the tsetse-infested belt of sub-Saharan Africa. Although a wealth of information on its occurrence and prevalence is available in the literature, synthesized and harmonized data at the regional and continental scales are lacking. To fill this gap the Food and Agriculture Organization of the United Nations (FAO) launched the Atlas of tsetse and AAT, jointly implemented with the International Atomic Energy Agency (IAEA) in the framework of the Programme Against African Trypanosomosis (PAAT).
The Atlas aims to build and regularly update a geospatial database of tsetse species occurrence and AAT at the continental level. The present paper focuses on the methodology to assemble a dynamic database of AAT, which hinges on herd-level prevalence data as estimated using various diagnostic techniques. A range of ancillary information items is also included (e.g. trypanosome species, survey period, species and breed of animals, husbandry system, etc.). Input data were initially identified through a literature review.
Preliminary results are presented for Ethiopia, Kenya and Uganda in East Africa: 122 papers were identified and analyzed, which contained field data collected from January 1990 to December 2013. Information on AAT was extracted and recorded for 348 distinct geographic locations. The presented distribution maps exemplify the range of outputs that can be directly generated from the AAT database.
Activities are ongoing to map the distribution of AAT in all affected countries and to develop the tsetse component of the Atlas. The presented methodology is also being transferred to partners in affected countries, with a view to developing capacity and strengthening data management, harmonization and sharing. In the future, geospatial modelling will enable predictions to be made within and beyond the range of AAT field observations. This variety of information layers will inform decisions on the most appropriate, site-specific strategies for intervention against AAT. Data on the occurrence of human-infective trypanosomes in non-human hosts will also provide valuable information for sleeping sickness control and elimination.
Url:
DOI: 10.1186/1756-3305-7-39
PubMed: 24447638
PubMed Central: 4015763
Affiliations:
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Mattioli</name><affiliation wicri:level="3"><nlm:aff id="I2">Food and Agriculture Organization of the United Nations (FAO), Animal Production and Health Division, Rome, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Food and Agriculture Organization of the United Nations (FAO), Animal Production and Health Division, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">24447638</idno><idno type="pmc">4015763</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4015763</idno><idno type="RBID">PMC:4015763</idno><idno type="doi">10.1186/1756-3305-7-39</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">000108</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000108</idno><idno type="wicri:Area/Pmc/Curation">000108</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000108</idno><idno type="wicri:Area/Pmc/Checkpoint">000087</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000087</idno><idno type="wicri:Area/Ncbi/Merge">000470</idno><idno type="wicri:Area/Ncbi/Curation">000470</idno><idno type="wicri:Area/Ncbi/Checkpoint">000470</idno><idno type="wicri:Area/Main/Merge">000230</idno><idno type="wicri:Area/Main/Curation">000231</idno><idno type="wicri:Area/Main/Exploration">000231</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Assembling a geospatial database of tsetse-transmitted animal trypanosomosis for Africa</title><author><name sortKey="Cecchi, Giuliano" sort="Cecchi, Giuliano" uniqKey="Cecchi G" first="Giuliano" last="Cecchi">Giuliano Cecchi</name><affiliation wicri:level="1"><nlm:aff id="I1">Food and Agriculture Organization of the United Nations (FAO), Sub-regional Office for Eastern Africa, Addis Ababa, Ethiopia</nlm:aff><country xml:lang="fr">Éthiopie</country><wicri:regionArea>Food and Agriculture Organization of the United Nations (FAO), Sub-regional Office for Eastern Africa, Addis Ababa</wicri:regionArea><wicri:noRegion>Addis Ababa</wicri:noRegion></affiliation></author><author><name sortKey="Paone, Massimo" sort="Paone, Massimo" uniqKey="Paone M" first="Massimo" last="Paone">Massimo Paone</name><affiliation wicri:level="3"><nlm:aff id="I2">Food and Agriculture Organization of the United Nations (FAO), Animal Production and Health Division, Rome, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Food and Agriculture Organization of the United Nations (FAO), Animal Production and Health Division, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Feldmann, Udo" sort="Feldmann, Udo" uniqKey="Feldmann U" first="Udo" last="Feldmann">Udo Feldmann</name><affiliation wicri:level="3"><nlm:aff id="I3">Joint Food and Agriculture Organization/International Atomic Energy Agency Programme, Vienna, Austria</nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea>Joint Food and Agriculture Organization/International Atomic Energy Agency Programme, Vienna</wicri:regionArea><placeName><settlement type="city">Vienne (Autriche)</settlement><region nuts="2" type="province">Vienne (Autriche)</region></placeName></affiliation></author><author><name sortKey="Vreysen, Marc Jb" sort="Vreysen, Marc Jb" uniqKey="Vreysen M" first="Marc Jb" last="Vreysen">Marc Jb Vreysen</name><affiliation wicri:level="3"><nlm:aff id="I3">Joint Food and Agriculture Organization/International Atomic Energy Agency Programme, Vienna, Austria</nlm:aff><country xml:lang="fr">Autriche</country><wicri:regionArea>Joint Food and Agriculture Organization/International Atomic Energy Agency Programme, Vienna</wicri:regionArea><placeName><settlement type="city">Vienne (Autriche)</settlement><region nuts="2" type="province">Vienne (Autriche)</region></placeName></affiliation></author><author><name sortKey="Diall, Oumar" sort="Diall, Oumar" uniqKey="Diall O" first="Oumar" last="Diall">Oumar Diall</name><affiliation wicri:level="1"><nlm:aff id="I1">Food and Agriculture Organization of the United Nations (FAO), Sub-regional Office for Eastern Africa, Addis Ababa, Ethiopia</nlm:aff><country xml:lang="fr">Éthiopie</country><wicri:regionArea>Food and Agriculture Organization of the United Nations (FAO), Sub-regional Office for Eastern Africa, Addis Ababa</wicri:regionArea><wicri:noRegion>Addis Ababa</wicri:noRegion></affiliation></author><author><name sortKey="Mattioli, Raffaele C" sort="Mattioli, Raffaele C" uniqKey="Mattioli R" first="Raffaele C" last="Mattioli">Raffaele C. Mattioli</name><affiliation wicri:level="3"><nlm:aff id="I2">Food and Agriculture Organization of the United Nations (FAO), Animal Production and Health Division, Rome, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Food and Agriculture Organization of the United Nations (FAO), Animal Production and Health Division, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author></analytic><series><title level="j">Parasites & Vectors</title><idno type="eISSN">1756-3305</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>African animal trypanosomosis (AAT), or nagana, is widespread within the tsetse-infested belt of sub-Saharan Africa. Although a wealth of information on its occurrence and prevalence is available in the literature, synthesized and harmonized data at the regional and continental scales are lacking. To fill this gap the Food and Agriculture Organization of the United Nations (FAO) launched the Atlas of tsetse and AAT, jointly implemented with the International Atomic Energy Agency (IAEA) in the framework of the Programme Against African Trypanosomosis (PAAT).</p></sec><sec><title>Methods</title><p>The Atlas aims to build and regularly update a geospatial database of tsetse species occurrence and AAT at the continental level. The present paper focuses on the methodology to assemble a dynamic database of AAT, which hinges on herd-level prevalence data as estimated using various diagnostic techniques. A range of ancillary information items is also included (e.g. trypanosome species, survey period, species and breed of animals, husbandry system, etc.). Input data were initially identified through a literature review.</p></sec><sec><title>Results</title><p>Preliminary results are presented for Ethiopia, Kenya and Uganda in East Africa: 122 papers were identified and analyzed, which contained field data collected from January 1990 to December 2013. Information on AAT was extracted and recorded for 348 distinct geographic locations. The presented distribution maps exemplify the range of outputs that can be directly generated from the AAT database.</p></sec><sec><title>Conclusions</title><p>Activities are ongoing to map the distribution of AAT in all affected countries and to develop the tsetse component of the Atlas. The presented methodology is also being transferred to partners in affected countries, with a view to developing capacity and strengthening data management, harmonization and sharing. In the future, geospatial modelling will enable predictions to be made within and beyond the range of AAT field observations. This variety of information layers will inform decisions on the most appropriate, site-specific strategies for intervention against AAT. Data on the occurrence of human-infective trypanosomes in non-human hosts will also provide valuable information for sleeping sickness control and elimination.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Taylor, K" uniqKey="Taylor K">K Taylor</name></author><author><name sortKey="Authie, Em L" uniqKey="Authie E">EM-L Authié</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Shaw, A" uniqKey="Shaw A">A Shaw</name></author><author><name sortKey="Cecchi, G" uniqKey="Cecchi G">G Cecchi</name></author><author><name sortKey="Wint, Grw" uniqKey="Wint G">GRW Wint</name></author><author><name sortKey="Mattioli, R" uniqKey="Mattioli R">R Mattioli</name></author><author><name sortKey="Robinson, T" uniqKey="Robinson T">T Robinson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cecchi, G" uniqKey="Cecchi G">G Cecchi</name></author><author><name sortKey="Mattioli, 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Cecchi</name></author><author><name sortKey="Mahama, C" uniqKey="Mahama C">C Mahama</name></author><author><name sortKey="Solano, P" uniqKey="Solano P">P Solano</name></author><author><name sortKey="Bengaly, Z" uniqKey="Bengaly Z">Z Bengaly</name></author><author><name sortKey="Van Den Bossche, P" uniqKey="Van Den Bossche P">P Van den Bossche</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Seck, M" uniqKey="Seck M">M Seck</name></author><author><name sortKey="Bouyer, J" uniqKey="Bouyer J">J Bouyer</name></author><author><name sortKey="Sall, B" uniqKey="Sall B">B Sall</name></author><author><name sortKey="Bengaly, Z" uniqKey="Bengaly Z">Z Bengaly</name></author><author><name sortKey="Vreysen, M" uniqKey="Vreysen M">M Vreysen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ahmed, Sk" uniqKey="Ahmed S">SK Ahmed</name></author><author><name sortKey="Rahman, Hma" uniqKey="Rahman H">HMA Rahman</name></author><author><name sortKey="Cecchi, G" uniqKey="Cecchi G">G Cecchi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cecchi, G" uniqKey="Cecchi G">G Cecchi</name></author><author><name sortKey="Mattioli, R" uniqKey="Mattioli R">R Mattioli</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Autriche</li><li>Italie</li><li>Éthiopie</li></country><region><li>Latium</li><li>Vienne (Autriche)</li></region><settlement><li>Rome</li><li>Vienne (Autriche)</li></settlement></list><tree><country name="Éthiopie"><noRegion><name sortKey="Cecchi, Giuliano" sort="Cecchi, Giuliano" uniqKey="Cecchi G" first="Giuliano" last="Cecchi">Giuliano Cecchi</name></noRegion><name sortKey="Diall, Oumar" sort="Diall, Oumar" uniqKey="Diall O" first="Oumar" last="Diall">Oumar Diall</name></country><country name="Italie"><region name="Latium"><name sortKey="Paone, Massimo" sort="Paone, Massimo" uniqKey="Paone M" first="Massimo" last="Paone">Massimo Paone</name></region><name sortKey="Mattioli, Raffaele C" sort="Mattioli, Raffaele C" uniqKey="Mattioli R" first="Raffaele C" last="Mattioli">Raffaele C. Mattioli</name></country><country name="Autriche"><region name="Vienne (Autriche)"><name sortKey="Feldmann, Udo" sort="Feldmann, Udo" uniqKey="Feldmann U" first="Udo" last="Feldmann">Udo Feldmann</name></region><name sortKey="Vreysen, Marc Jb" sort="Vreysen, Marc Jb" uniqKey="Vreysen M" first="Marc Jb" last="Vreysen">Marc Jb Vreysen</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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